CDS

Accession Number TCMCG027C21783
gbkey CDS
Protein Id XP_035548897.1
Location complement(join(3315990..3316728,3317464..3317619,3318332..3318493,3318625..3318755,3318986..3319091,3319172..3319271,3319402..3319527,3320492..3320692,3320834..3320921,3321073..3321121,3321221..3321316,3321734..3321817,3322195..3322253,3322351..3322385,3322474..3322598,3324829..3324904,3325672..3325833,3326000..3326006,3326103..3326140,3326231..3326310,3327113..3327184,3327382..3327473,3327695..3327769,3328908..3329044,3329139..3329224,3330750..3330841,3330925..3331269))
Gene LOC109013752
GeneID 109013752
Organism Juglans regia

Protein

Length 1172aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA350852
db_source XM_035693004.1
Definition DNA ligase 4 [Juglans regia]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10777        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03450        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
GOs GO:0000726        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010165        [VIEW IN EMBL-EBI]
GO:0010212        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032807        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048046        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACGGACCCGACAGGGACCAACACTAAGTTCAGCGTGCTCTGCAGTCTCTTCACTTGGATGCAGCGGAGCAAGTCGTCCGCCAAGAAGCGTTCCAAGTTCCGCAAGTTCCTCGACGCCTTCTGCGATCCTGGCAACTACTTCTGTCCCATCCGCCTGATCCTTCCGAACCTCGACCGAGAGCGCGGCAACTATGGTCTTAAGGAGTCCGTCCTCGCCACCTGCCTCATCGACGCCCTCGGCATGTCCCGCGACTCCCACGATGCCCTCCGCCTCTTCAATTGGCGCAAAGGCGGTGCCCGCTCCGGCTCCAATGCCGGAAACTTCTCCCTTGTCGCGGCTGAGGTATTGCAGCCAAGGCAAGGGATGGCTTCCGGTGGACTAACAATCCAGGACGTGAACGATTTGCTTGATCGCTTGGCTTCTTCTGAAAATAGGGCTGAGAAGACATCGGTTCTTTCTACTCTGATAAACAAGACAAATGCTCAGGAAATGAAGTGGATTATCATGATTATTCTTAAAGATTTGAAGCTGGGGATTAGTGAAAAGAGCATTTTTCATGAGTTCCATCCTGATGCTGAAGACTTGTTTAATGTGACATGTGACCTAAAATTGGTTTGTGAAAGGCTAAGGAGTCGAAGACAAAGGCATAAACGCCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCACAACTAGCTATGAGAGTTGCTGATGCTACAGCTGCATGGAAAAAGCTTAATGGGAAGGAAGTGGTTGCCGAATGCAAATTTGATGGTGATCGCATTCAAATTCATAAGAATGGAAATGAGATACACTTCTTCTCAAGGAACTTTCTTGATCACTCTGAATACGTGCATGGGATGTTGGATGTTATTATACAAAATGTTCTGGTCGATAGATGTATACTTGATGGTGAAATGTTGGTCTGGGACACATCTTTGAATCGTTTTGCTGAGTTTGGTTCAAATCAGGAAATAGCCAAGGCCGCAAAGGATGGACTGGACAGTGATAGACAGTTGTGCTATGTTGCATTTGACATTCTTTATGTTGGGGATACCAGTGTAATTCACCAAAGCTTGAAGGAACGGCACGAGCTCCTGCAGAAAGTTGTGAAGCCTCTGAAGGGTCGTTTGGAAATCTTAGTACCTAATGTTGGACTTGGTCTTAATATTCTCCGCCCTTCTGGGGAACCTTGTTGGTCACTTATTGCTCATAATGTGGATGATGTTGAGAGGTTCTTCAAAGAAACCATTGAGAATAGAGATGAAGGGATTGTGTTAAAGGACCCTGGTTCCAAATGGGAACCTAGTGATCGGAGTGGAAAGTGGTTGAAATTGAAGCCTGACTACATTCGTGCTGGCTCTGATCTGGATGTTCTTATTATAGGAGGATACTATGGCTCGGGACGTCATGGTGGGGAGGTAGCTCAATTCTTGGTGGGCCTTGCAGAGCGTCCTGCACCAAATACATACCCTAGGCGATTTATTTCTTTCTGTAGAGTGGGTACTGGACTTTCTGATGAGGAGCTGGATGCTGTTGCAACCAAATTGAAGCCTCATTTTAGGAAATATGAATACCCAAGGAATGGGCCACCAACTTTTTATCAAGTAACGAATAACTCAAAAGAAAGACCGGATGTGTGGATTGACAGCCCTGAGAAATCAATAATTCTTTCCATTACTAGTGATATCCGAACTATAAGGTCTGAGGTATTTGCTGCACCATATAGCCTGAGATTTCCGCGTATTGACCGAGTCAGATATGACAAACCTTGGCACGAATGCCTTGATTTGCAATCTTTTGTAGAACTTGTACATTCAAGCAATGGTACTACACAAATGGGGACAAATTATGGTGGCCTCCAGGAAAGTAAACAAAAACGCTTGAAATCCTCTAAGGGAGGGAAAAAGAATGTCTCTGTTGTACCTTCTCATTTGATAAAGACTGATGTTTCTGACATTAAAGGGGGCTCCTCAATATTTTCGAATATGATGTTTTACTTTGTTAATGTTCCATCAACCGTCTCTCTTGATTCTTTGCACAAAATGGTTGCTGAGAATGGAGGGACTTTCTCGATGAATTTGAATAAATCAGTTACCCATTGTGTTGCAGCTGATGGCAAGGGGATTAAGTATCAGGCAGCAAAACTTTGTGGTGATATTATTCATTGTTCTTGGGTATTGGATTGCTGCTCAGAAAAGAAGCTTCTCCATTTACAGCCAAAGTACTTCCTTTTCCTCTCTGAATCATCAAAGAAGAAGTTACAAGAAGACATTGATGAATTTTCTGACTCATACTATCAGGATCTTGATCTTCTGGACATCAAACAGCTATTAAGTAATGTGAACAGATCTGAGGATATGAAAACTATCGACTACTATAAGAAGAAGTACTGTCCAAAGAAGAAATGGTCTCTCTTTCATGGCTGCTGTGTTTACTTCCACTCTTCAATATCATCCTTGAATCCAGAATGGGAAGTTCTGTGGAGACTTGCATTAAGGAGGTTGAAGCTTGAGGTTTCCATGGCTGGTGGAAAAGTCAGTAGCAGTCTTGCTCTTGCTACCCATTTGGTAGTCTTTTCTGTACCAGGTCTTGATGTGGACTTTGGAACCATATCAAAAGGTTTATCTCTGTCGGAGAAGCATCTATTATGGAACAAAGTGTTGCATGTTGTGAAATCTCAATGGTTGGAAGACTGCTTGGAGAGGGACCAAAGATTGCCAGAAGAAACATATAGCTTGAAGGTGATTGGGGTGCACAATTCAAACACTGTAGAGTGCAAACATGATAAACATGACCTGGATTTAGGAGTTCTTTCTGGATCGGATAATGAAGAAAAACAGAATATGCACTGTTCTCCTGATGGAAGGAAACAGGGAAGAGAGGAAGCTCCTTTAGCGAAACCTAAAATTTTGGCCTCATACGAGGGGGTGGGGAAAAGGAAACGAGGAAGACCTGCTGGTACAAGCAGGAAATTTAAAGGAAAAACAACTATGGTTCAAGCTCGGAGAACACGGGCACGTATTGGAAAGAGACCTGCTAAAATATCTGATAATGAATCAGACGAAAGTGGATCTCATGATGAGAAGACGCACGGGAAAGAGATCAAAATGATGGAAGGAACTCATGAAATGGCAGGCAATGGAAGCTCAGAAATCGAAGAGACTGAAATAATAGAAGCATTTGAATCATCACCTAGGGGCAAGGTGGCTGAGCAAGAGGTTGAAAAGGATGTTGGATATCAAAAGTGGTACGACAAAGTTCCTGAAGTGGGATTGACTACAACCCTAAGTAGCCAACACAGTGAGAGGTCCGAGAAGTTGGAAGTTATGACTGATCCGGTTCAAGCCATGTTATTGGACATGATTCCAAGTCTCGGAGTGACGGCAGCCAGGGCTAAAGATACGATTACTGTCACTGATGGTGAGACACAACCCTTGGATCCCAATGCAGAGCCTAAGAAGAAAAAGAAGGTAAGCTACAAGGATGTTGCTGGTGAGTTACTCAAGGATTGGTAA
Protein:  
MTDPTGTNTKFSVLCSLFTWMQRSKSSAKKRSKFRKFLDAFCDPGNYFCPIRLILPNLDRERGNYGLKESVLATCLIDALGMSRDSHDALRLFNWRKGGARSGSNAGNFSLVAAEVLQPRQGMASGGLTIQDVNDLLDRLASSENRAEKTSVLSTLINKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCERLRSRRQRHKRQDIEVGKAVRPQLAMRVADATAAWKKLNGKEVVAECKFDGDRIQIHKNGNEIHFFSRNFLDHSEYVHGMLDVIIQNVLVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERHELLQKVVKPLKGRLEILVPNVGLGLNILRPSGEPCWSLIAHNVDDVERFFKETIENRDEGIVLKDPGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERPAPNTYPRRFISFCRVGTGLSDEELDAVATKLKPHFRKYEYPRNGPPTFYQVTNNSKERPDVWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKPWHECLDLQSFVELVHSSNGTTQMGTNYGGLQESKQKRLKSSKGGKKNVSVVPSHLIKTDVSDIKGGSSIFSNMMFYFVNVPSTVSLDSLHKMVAENGGTFSMNLNKSVTHCVAADGKGIKYQAAKLCGDIIHCSWVLDCCSEKKLLHLQPKYFLFLSESSKKKLQEDIDEFSDSYYQDLDLLDIKQLLSNVNRSEDMKTIDYYKKKYCPKKKWSLFHGCCVYFHSSISSLNPEWEVLWRLALRRLKLEVSMAGGKVSSSLALATHLVVFSVPGLDVDFGTISKGLSLSEKHLLWNKVLHVVKSQWLEDCLERDQRLPEETYSLKVIGVHNSNTVECKHDKHDLDLGVLSGSDNEEKQNMHCSPDGRKQGREEAPLAKPKILASYEGVGKRKRGRPAGTSRKFKGKTTMVQARRTRARIGKRPAKISDNESDESGSHDEKTHGKEIKMMEGTHEMAGNGSSEIEETEIIEAFESSPRGKVAEQEVEKDVGYQKWYDKVPEVGLTTTLSSQHSERSEKLEVMTDPVQAMLLDMIPSLGVTAARAKDTITVTDGETQPLDPNAEPKKKKKVSYKDVAGELLKDW